crux hardklor

Usage:
crux hardklor [options] <spectra>
Description:

Hardklör analyzes high-resolution mass spectra, identifying protein or peptide isotope distributions and determining the corresponding monoisotopic masses and charge states. Hardklör is specifically designed to handle overlapping isotope distributions in a single spectrum. A detailed description of the Hardklör algorithm is given in

Hoopmann MR, Finney GL and MacCoss MJ. "High speed data reduction, feature selection, and MS/MS spectrum quality assessment of shotgun proteomics datasets using high resolution mass spectrometry." Analytical Chemistry. 79:5630-5632 (2007).

Input:

Output:

The program writes files to the folder crux-output by default. The name of the output folder can be set by the user using the --output-dir option. The following files will be created:

Options: Notes:

Crux home